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Protein and ligand atoms were outlined to keep in touch with one another if they had been inside a distance of the sum of the van der Waals radii plus zero.5 Å. They used a test set of 10 proteins and located that 100 percent of the contacting atoms were recognized in each case. The major drawback of this technique is that false optimistic protein residues are not taken under consideration. If the complete floor of a protein have been recognized as a predicted binding website, it would score 100%. Figure four r
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