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A long-term dataset, including physicochemical, nutrient, and phytoplankton assemblages from 1994 to 2016, was analyzed to investigate the response of the algal community to variations in environmental factors in Deep Bay and Mirs Bay in southern China. These bays differ in their overall nutrient loadings, as well as in physical factors. The results showed that diatoms were numerically dominant in Mirs Bay, while other minor phytoplankton groups, including eutrophication-tolerant species, constituted the majority in Deep Bay. Phytoplank
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