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Parameter estimation using real data for Coffea trees provided access to the internal trophic dynamics. These dynamics correlated with the organogenesis probabilities during the establishment phase. The model can satisfactorily reproduce the measured data, thus opening up promising avenues for further applying this original procedure to other experimental data. The framework developed can serve as a model-based toolkit to reconstruct the hidden internal trophic dynamics of plant growth. The model can satisfactorily reproduce the measured
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